Thingiverse
APAF-1 & Caspase-9 Complex (PDB 4RHW) by sokamarintchak
by Thingiverse
Last crawled date: 2 years, 12 months ago
Imaged is my first printout of one-half of the PDB 4RHW molecule (APAF-1 & Caspase-9 complex). The printout is very rigid adding in reinforcing connections. After printing, a few unstable locations were identified. The main weak point being the chloride atom found near the center of the molecule. Additional reinforcing connections were added and included within the provided file.
The APAF-1 is a key player in the execution of apoptosis, or programmed cell death. Oligomerization of 7 APAF-1 molecules a structure called the "apoptosome" forms. The apoptosome converts pro-caspase-9 to caspase-9 which is important for the activation of cellular proteases involved in apoptosis. This protein molecule is interesting in that it only contains alpha-helices.
The original PDB file (4RHW: http://www.rcsb.org/pdb/explore/explore.do?structureId=4RHW) was manipulated using VMD (http://www.ks.uiuc.edu/Research/vmd/) to remove water and sulfate molecules. The protein in the PDB file is a dimer so half the protein was isolated and represented. The structural representation in VMD was then set to NewCartoon and exported out of VMD as an .STL file.
The .STL file was imported into Tinkercad (https://www.tinkercad.com/). Within Tinkercad, reinforcing braces and supports were added manually. The reinforcing braces between the alpha-helices are meant to be left within the molecule to increase structural rigidity whereas the base supports were added to facilitate the printing process.
The APAF-1 is a key player in the execution of apoptosis, or programmed cell death. Oligomerization of 7 APAF-1 molecules a structure called the "apoptosome" forms. The apoptosome converts pro-caspase-9 to caspase-9 which is important for the activation of cellular proteases involved in apoptosis. This protein molecule is interesting in that it only contains alpha-helices.
The original PDB file (4RHW: http://www.rcsb.org/pdb/explore/explore.do?structureId=4RHW) was manipulated using VMD (http://www.ks.uiuc.edu/Research/vmd/) to remove water and sulfate molecules. The protein in the PDB file is a dimer so half the protein was isolated and represented. The structural representation in VMD was then set to NewCartoon and exported out of VMD as an .STL file.
The .STL file was imported into Tinkercad (https://www.tinkercad.com/). Within Tinkercad, reinforcing braces and supports were added manually. The reinforcing braces between the alpha-helices are meant to be left within the molecule to increase structural rigidity whereas the base supports were added to facilitate the printing process.
Similar models
thingiverse
free
Green Fluorescent Protein by aarono
...c.edu/research/vmd/
the protein backbone is represented in "cartoon" form. the chromophore is represented by spheres.
thingiverse
free
Ankyrin Repeat Domain by aarono
...k1a:http://www.rcsb.org/pdb/explore/explore.do?structureid=1k1a
stl file created using vmd:http://www.ks.uiuc.edu/research/vmd/
thingiverse
free
Jelly Roll Protein by aarono
...
stl file created using vmd:http://www.ks.uiuc.edu/research/vmd/
the protein backbone is represented in "cartoon" form.
thingiverse
free
Protein Structure by maker_uitm
...eceptor: https://www.rcsb.org/structure/2fsz
i created the .stl file using the vmd software, http://www.ks.uiuc.edu/research/vmd/
thingiverse
free
Collagen by aarono
...entry 1cag:
--http://www.pdb.org/pdb/explore/explore.do?pdbid=1cag
model created using vmd:http://www.ks.uiuc.edu/research/vmd/
thingiverse
free
Retinol-Binding Protein by aarono
...esearch/vmd/
the protein backbone is represented in "cartoon" form. residues contacting retinol are shown as spheres.
thingiverse
free
Hammerhead Ribozyme by aarono
... 1hmh:http://www.rcsb.org/pdb/explore/explore.do?structureid=1hmh
stl file created using vmd:http://www.ks.uiuc.edu/research/vmd/
thingiverse
free
Nucleosome Core Complex by aarono
...5
there are separate stl files for the protein and dna components.
model created using vmd:http://www.ks.uiuc.edu/research/vmd/
thingiverse
free
DNA polymerase by aarono
...hnh:http://www.rcsb.org/pdb/explore/explore.do?structureid=2hnh
stl file created using vmd:http://www.ks.uiuc.edu/research/vmd/
thingiverse
free
T4 Bacteriophage clamp gp45 by aarono
...czdhttp://www.rcsb.org/pdb/explore/explore.do?structureid=3u60
stl files created using vmd:http://www.ks.uiuc.edu/research/vmd/
Pdb
thingiverse
free
PDB insulator by BootsyLee
...pdb insulator by bootsylee
thingiverse
was designed as a spacer to insulate the pdb from a carbon fiber frame.
thingiverse
free
Dinucleossome PDB 1ZBB by Munfred
...dinucleossome pdb 1zbb by munfred
thingiverse
surface model of dinucleossome, pdb 1zbb
thingiverse
free
PDB Plate by Dreadyrasta
...dyrasta
thingiverse
its simply a little plate to cover the pdb or flight controller.
its 2mm thick, so its a little bit massive.
thingiverse
free
RCExplorer BiCopter PDB Riser by LitterBug
... the pdb to allow the battery strap to be mounted below the pdb and wires so it doesn't pull on the wiring or pdb components.
thingiverse
free
Distanzplatte Matek XT60 PDB by FPV57
...distanzplatte matek xt60 pdb by fpv57
thingiverse
distanzplatte matek xt60 pdb
thingiverse
free
DNA Bender PDB 1TGH by Munfred
...dna bender pdb 1tgh by munfred
thingiverse
model of dna bender, pdb 1tgh
thingiverse
free
Zinc Finger PDB 1ZAA by Munfred
...zinc finger pdb 1zaa by munfred
thingiverse
model of a zinc finger, pdb 1zaa
thingiverse
free
PDB Isolating Tray by infiniteFPV
... tray by infinitefpv
thingiverse
tray i use on my builds to isolate pdb from carbon frame.
infinitefpv: http://infinitefpv.com
thingiverse
free
NASE 32 BOXES AND pdb by Danydan
...nase 32 boxes and pdb by danydan
thingiverse
boite pour naze 32 et carte pdb
thingiverse
free
Matek PDB support and XT60 socket protection by corristo25
...pdb support and xt60 socket protection by corristo25
thingiverse
i made a pdb support for matek pdb with xt60 socket protection.
Complex
3d_ocean
$2
Complex Maze
...complex maze
3docean
building complex curve hilbert maze modern technology
a maze like structure in true 3d space.
turbosquid
$15
BATH COMPLEX
...squid
royalty free 3d model bath complex for download as rvt on turbosquid: 3d models for games, architecture, videos. (1676691)
turbosquid
$115
Residential Complex
...free 3d model residential complex for download as skp and dwg on turbosquid: 3d models for games, architecture, videos. (1552269)
turbosquid
$40
Sport Complex
...3d model sport complex for download as 3ds, max, obj, and fbx on turbosquid: 3d models for games, architecture, videos. (1401140)
turbosquid
$120
sport complex
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$99
Complex building
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$50
Residential complex
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$40
Apartment complex
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$30
Building Complex
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$30
game complex
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
9
3ddd
$1
9
...9
3ddd
консоль
9
turbosquid
$12
Calligraphic Digit 9 Number 9
...hic digit 9 number 9 for download as max, obj, fbx, and blend on turbosquid: 3d models for games, architecture, videos. (1389349)
3ddd
$1
PLANTS 9
...plants 9
3ddd
папоротник , кашпо
plant 9.. hope u all like it
design_connected
$11
194 9
...194 9
designconnected
194 9 computer generated 3d model. designed by lissoni, piero.
design_connected
free
Tangram 9
...tangram 9
designconnected
free 3d model of tangram 9 by lago designed by lago, daniele.
design_connected
$11
Domino 9
...domino 9
designconnected
zanotta domino 9 computer generated 3d model. designed by progetti, emaf.
design_connected
$20
Docks 9
...docks 9
designconnected
gandia blasco docks 9 computer generated 3d model. designed by romero vallejo.
3d_export
$80
mq-9
...mq-9
3dexport
3d_export
$6
washbasin-9
...washbasin-9
3dexport
3d_export
$6
set-9
...set-9
3dexport
1
turbosquid
$15
ring 1+1
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$10
chair(1)(1)
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$8
Chair(1)(1)
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$2
RING 1(1)
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$1
Table 1(1)
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$1
house 1(1)
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
design_connected
$11
No 1
...no 1
designconnected
sibast no 1 computer generated 3d model. designed by sibast, helge.
turbosquid
$50
door 1 darkwood 1
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$15
Barrel Barricade 1-1
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.
turbosquid
$15
Door Lock(1)(1)
... available on turbo squid, the world's leading provider of digital 3d models for visualization, films, television, and games.